Detalhe da pesquisa
1.
Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction.
Brief Bioinform
; 25(3)2024 Mar 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-38605640
2.
GPSFun: geometry-aware protein sequence function predictions with language models.
Nucleic Acids Res
; 2024 May 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-38738636
3.
EVLncRNAs 3.0: an updated comprehensive database for manually curated functional long non-coding RNAs validated by low-throughput experiments.
Nucleic Acids Res
; 52(D1): D98-D106, 2024 Jan 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37953349
4.
Subgraph extraction and graph representation learning for single cell Hi-C imputation and clustering.
Brief Bioinform
; 25(1)2023 11 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38040494
5.
Accurately identifying nucleic-acid-binding sites through geometric graph learning on language model predicted structures.
Brief Bioinform
; 24(6)2023 09 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-37824738
6.
Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion.
Brief Bioinform
; 24(3)2023 05 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36964722
7.
Fast and accurate protein intrinsic disorder prediction by using a pretrained language model.
Brief Bioinform
; 24(4)2023 07 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-37204193
8.
Identifying spatial domain by adapting transcriptomics with histology through contrastive learning.
Brief Bioinform
; 24(2)2023 03 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36781228
9.
From intuition to AI: evolution of small molecule representations in drug discovery.
Brief Bioinform
; 25(1)2023 11 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38033290
10.
EVlncRNA-Dpred: improved prediction of experimentally validated lncRNAs by deep learning.
Brief Bioinform
; 24(1)2023 01 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36573492
11.
An uncertainty-based interpretable deep learning framework for predicting breast cancer outcome.
BMC Bioinformatics
; 25(1): 88, 2024 Feb 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-38418940
12.
Prioritizing genomic variants pathogenicity via DNA, RNA, and protein-level features based on extreme gradient boosting.
Hum Genet
; 2024 Apr 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-38575818
13.
Genome-wide association and Mendelian randomization analysis provide insights into the shared genetic architecture between high-dimensional electrocardiographic features and ischemic heart disease.
Hum Genet
; 143(1): 49-58, 2024 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-38180560
14.
Predicting the effects of mutations on protein solubility using graph convolution network and protein language model representation.
J Comput Chem
; 45(8): 436-445, 2024 Mar 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-37933773
15.
Capturing large genomic contexts for accurately predicting enhancer-promoter interactions.
Brief Bioinform
; 23(2)2022 03 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35062021
16.
AlphaFold2-aware protein-DNA binding site prediction using graph transformer.
Brief Bioinform
; 23(2)2022 03 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35039821
17.
A robust and scalable graph neural network for accurate single-cell classification.
Brief Bioinform
; 23(2)2022 03 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35018408
18.
A parameter-free deep embedded clustering method for single-cell RNA-seq data.
Brief Bioinform
; 23(5)2022 09 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524494
19.
Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning.
Brief Bioinform
; 23(6)2022 11 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36274238
20.
Spatial transcriptomics prediction from histology jointly through Transformer and graph neural networks.
Brief Bioinform
; 23(5)2022 09 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-35849101